Inheritance diagram for beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_FLOAT >:
Public Member Functions | |
| virtual const char * | getName () |
| virtual const long | getFlags () |
 Public Member Functions inherited from beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT > | |
| virtual void | calcStatesStates (REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const int *states2, const REALTYPE *matrices2) |
| virtual void | calcStatesPartials (REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE *matrices2) |
| virtual void | calcPartialsPartials (REALTYPE *destP, const REALTYPE *partials1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE *matrices2) |
| virtual int | calcRootLogLikelihoods (const int bufferIndex, const int categoryWeightsIndex, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) |
| virtual int | calcRootLogLikelihoodsMulti (const int *bufferIndices, const int *categoryWeightsIndices, const int *stateFrequenciesIndices, const int *scaleBufferIndices, int count, double *outSumLogLikelihood) |
| virtual void | calcStatesStatesFixedScaling (REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const int *child1States, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) |
| virtual void | calcStatesPartialsFixedScaling (REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) |
| virtual void | calcPartialsPartialsFixedScaling (REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) |
| virtual void | calcPartialsPartialsAutoScaling (REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, int *activateScaling) |
| int | integrateOutStatesAndScale (const REALTYPE *integrationTmp, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) |
| virtual void | rescalePartials (REALTYPE *destP, REALTYPE *scaleFactors, REALTYPE *cumulativeScaleFactors, const int fillWithOnes) |
Protected Member Functions | |
| virtual int | getPaddedPatternsModulus () |
The documentation for this class was generated from the following files:
- libhmsbeagle/CPU/BeagleCPU4StateSSEImpl.h
- libhmsbeagle/CPU/BeagleCPU4StateSSEImpl.hpp
