Dumped on 2005-04-07

Index of database - bioseqdb

public

biodatabase
bioentry
bioentry_dbxref
bioentry_path
bioentry_qualifier_value
bioentry_reference
bioentry_relationship
biosequence
comment
dbxref
dbxref_qualifier_value
location
location_qualifier_value
ontology
reference
seqfeature
seqfeature_dbxref
seqfeature_path
seqfeature_qualifier_value
seqfeature_relationship
taxon
taxon_name
term
term_dbxref
term_path
term_relationship
term_relationship_term
term_synonym
constrain_taxon( )
unconstrain_taxon( )

Table: biodatabase

biodatabase Structure
Name	Type	Description
biodatabase_id	integer	PRIMARY KEY DEFAULT nextval('biodatabase_pk_seq'::text)
name	character varying(128)	UNIQUE NOT NULL
authority	character varying(128)
description	text

Tables referencing this one via Foreign Key Constraints:

bioentry

Index - Schema public

Table: bioentry

bioentry Structure
F-Key	Name	Type	Description
	bioentry_id	integer	PRIMARY KEY DEFAULT nextval('bioentry_pk_seq'::text)
biodatabase.biodatabase_id	biodatabase_id	integer	UNIQUE#1 UNIQUE#2 NOT NULL
taxon.taxon_id	taxon_id	integer
	name	character varying(40)	NOT NULL
	accession	character varying(40)	UNIQUE#1 NOT NULL
	identifier	character varying(40)	UNIQUE#2
	division	character varying(6)
	description	text
	version	integer	UNIQUE#1 NOT NULL

Tables referencing this one via Foreign Key Constraints:

bioentry_dbxref

bioentry_path

bioentry_qualifier_value

bioentry_reference

bioentry_relationship

biosequence

comment

seqfeature

Index - Schema public

Table: bioentry_dbxref

bioentry_dbxref Structure
F-Key	Name	Type	Description
bioentry.bioentry_id	bioentry_id	integer	PRIMARY KEY
dbxref.dbxref_id	dbxref_id	integer	PRIMARY KEY
	rank	integer

Index - Schema public

Table: bioentry_path

bioentry_path Structure
F-Key	Name	Type	Description
bioentry.bioentry_id	object_bioentry_id	integer	UNIQUE#1 NOT NULL
bioentry.bioentry_id	subject_bioentry_id	integer	UNIQUE#1 NOT NULL
term.term_id	term_id	integer	UNIQUE#1 NOT NULL
	distance	integer	UNIQUE#1

Index - Schema public

Table: bioentry_qualifier_value

bioentry_qualifier_value Structure
F-Key	Name	Type	Description
bioentry.bioentry_id	bioentry_id	integer	UNIQUE#1 NOT NULL
term.term_id	term_id	integer	UNIQUE#1 NOT NULL
	value	text
	rank	integer	UNIQUE#1 NOT NULL

Index - Schema public

Table: bioentry_reference

bioentry_reference Structure
F-Key	Name	Type	Description
bioentry.bioentry_id	bioentry_id	integer	PRIMARY KEY
reference.reference_id	reference_id	integer	PRIMARY KEY
	start_pos	integer
	end_pos	integer
	rank	integer	PRIMARY KEY

Index - Schema public

Table: bioentry_relationship

bioentry_relationship Structure
F-Key	Name	Type	Description
	bioentry_relationship_id	integer	PRIMARY KEY DEFAULT nextval('bioentry_relationship_pk_seq'::text)
bioentry.bioentry_id	object_bioentry_id	integer	UNIQUE#1 NOT NULL
bioentry.bioentry_id	subject_bioentry_id	integer	UNIQUE#1 NOT NULL
term.term_id	term_id	integer	UNIQUE#1 NOT NULL
	rank	integer

Index - Schema public

Table: biosequence

biosequence Structure
F-Key	Name	Type	Description
bioentry.bioentry_id	bioentry_id	integer	PRIMARY KEY
	version	integer
	length	integer
	alphabet	character varying(10)
	seq	text

Index - Schema public

Table: comment

comment Structure
F-Key	Name	Type	Description
	comment_id	integer	PRIMARY KEY DEFAULT nextval('comment_pk_seq'::text)
bioentry.bioentry_id	bioentry_id	integer	UNIQUE#1 NOT NULL
	comment_text	text	NOT NULL
	rank	integer	UNIQUE#1 NOT NULL

Index - Schema public

Table: dbxref

dbxref Structure
Name	Type	Description
dbxref_id	integer	PRIMARY KEY DEFAULT nextval('dbxref_pk_seq'::text)
dbname	character varying(40)	UNIQUE#1 NOT NULL
accession	character varying(40)	UNIQUE#1 NOT NULL
version	integer	UNIQUE#1 NOT NULL

Tables referencing this one via Foreign Key Constraints:

bioentry_dbxref

dbxref_qualifier_value

location

reference

seqfeature_dbxref

term_dbxref

Index - Schema public

Table: dbxref_qualifier_value

dbxref_qualifier_value Structure
F-Key	Name	Type	Description
dbxref.dbxref_id	dbxref_id	integer	PRIMARY KEY
term.term_id	term_id	integer	PRIMARY KEY
	rank	integer	PRIMARY KEY
	value	text

Index - Schema public

Table: location

location Structure
F-Key	Name	Type	Description
	location_id	integer	PRIMARY KEY DEFAULT nextval('location_pk_seq'::text)
seqfeature.seqfeature_id	seqfeature_id	integer	UNIQUE#1 NOT NULL
dbxref.dbxref_id	dbxref_id	integer
term.term_id	term_id	integer
	start_pos	integer
	end_pos	integer
	strand	integer	NOT NULL
	rank	integer	UNIQUE#1 NOT NULL

Tables referencing this one via Foreign Key Constraints:

location_qualifier_value

Index - Schema public

Table: location_qualifier_value

location_qualifier_value Structure
F-Key	Name	Type	Description
location.location_id	location_id	integer	PRIMARY KEY
term.term_id	term_id	integer	PRIMARY KEY
	value	character varying(255)	NOT NULL
	int_value	integer

Index - Schema public

Table: ontology

ontology Structure
Name	Type	Description
ontology_id	integer	PRIMARY KEY DEFAULT nextval('ontology_pk_seq'::text)
name	character varying(32)	UNIQUE NOT NULL
definition	text

Tables referencing this one via Foreign Key Constraints:

term

term_path

term_relationship

Index - Schema public

Table: reference

reference Structure
F-Key	Name	Type	Description
	reference_id	integer	PRIMARY KEY DEFAULT nextval('reference_pk_seq'::text)
dbxref.dbxref_id	dbxref_id	integer	UNIQUE
	location	text	NOT NULL
	title	text
	authors	text
	crc	character varying(32)	UNIQUE

Tables referencing this one via Foreign Key Constraints:

bioentry_reference

Index - Schema public

Table: seqfeature

seqfeature Structure
F-Key	Name	Type	Description
	seqfeature_id	integer	PRIMARY KEY DEFAULT nextval('seqfeature_pk_seq'::text)
bioentry.bioentry_id	bioentry_id	integer	UNIQUE#1 NOT NULL
term.term_id	type_term_id	integer	UNIQUE#1 NOT NULL
term.term_id	source_term_id	integer	UNIQUE#1 NOT NULL
	display_name	character varying(64)
	rank	integer	UNIQUE#1 NOT NULL

Tables referencing this one via Foreign Key Constraints:

location

seqfeature_dbxref

seqfeature_path

seqfeature_qualifier_value

seqfeature_relationship

Index - Schema public

Table: seqfeature_dbxref

seqfeature_dbxref Structure
F-Key	Name	Type	Description
seqfeature.seqfeature_id	seqfeature_id	integer	PRIMARY KEY
dbxref.dbxref_id	dbxref_id	integer	PRIMARY KEY
	rank	integer

Index - Schema public

Table: seqfeature_path

seqfeature_path Structure
F-Key	Name	Type	Description
seqfeature.seqfeature_id	object_seqfeature_id	integer	UNIQUE#1 NOT NULL
seqfeature.seqfeature_id	subject_seqfeature_id	integer	UNIQUE#1 NOT NULL
term.term_id	term_id	integer	UNIQUE#1 NOT NULL
	distance	integer	UNIQUE#1

Index - Schema public

Table: seqfeature_qualifier_value

seqfeature_qualifier_value Structure
F-Key	Name	Type	Description
seqfeature.seqfeature_id	seqfeature_id	integer	PRIMARY KEY
term.term_id	term_id	integer	PRIMARY KEY
	rank	integer	PRIMARY KEY
	value	text	NOT NULL

Index - Schema public

Table: seqfeature_relationship

seqfeature_relationship Structure
F-Key	Name	Type	Description
	seqfeature_relationship_id	integer	PRIMARY KEY DEFAULT nextval('seqfeature_relationship_pk_seq'::text)
seqfeature.seqfeature_id	object_seqfeature_id	integer	UNIQUE#1 NOT NULL
seqfeature.seqfeature_id	subject_seqfeature_id	integer	UNIQUE#1 NOT NULL
term.term_id	term_id	integer	UNIQUE#1 NOT NULL
	rank	integer

Index - Schema public

Table: taxon

taxon Structure
Name	Type	Description
taxon_id	integer	PRIMARY KEY DEFAULT nextval('taxon_pk_seq'::text)
ncbi_taxon_id	integer	UNIQUE
parent_taxon_id	integer
node_rank	character varying(32)
genetic_code	smallint
mito_genetic_code	smallint
left_value	integer	UNIQUE
right_value	integer	UNIQUE

Tables referencing this one via Foreign Key Constraints:

bioentry

taxon_name

Index - Schema public

Table: taxon_name

taxon_name Structure
F-Key	Name	Type	Description
taxon.taxon_id	taxon_id	integer	UNIQUE#1 NOT NULL
	name	character varying(255)	UNIQUE#1 NOT NULL
	name_class	character varying(32)	UNIQUE#1 NOT NULL

Index - Schema public

Table: term

term Structure
F-Key	Name	Type	Description
	term_id	integer	PRIMARY KEY DEFAULT nextval('term_pk_seq'::text)
	name	character varying(255)	UNIQUE#1 NOT NULL
	definition	text
	identifier	character varying(40)	UNIQUE
	is_obsolete	character(1)	UNIQUE#1
ontology.ontology_id	ontology_id	integer	UNIQUE#1 NOT NULL

Tables referencing this one via Foreign Key Constraints:

bioentry_path

bioentry_qualifier_value

bioentry_relationship

dbxref_qualifier_value

location

location_qualifier_value

seqfeature

seqfeature_path

seqfeature_qualifier_value

seqfeature_relationship

term_dbxref

term_path

term_relationship

term_relationship_term

term_synonym

Index - Schema public

Table: term_dbxref

term_dbxref Structure
F-Key	Name	Type	Description
term.term_id	term_id	integer	PRIMARY KEY
dbxref.dbxref_id	dbxref_id	integer	PRIMARY KEY
	rank	integer

Index - Schema public

Table: term_path

term_path Structure
F-Key	Name	Type	Description
	term_path_id	integer	PRIMARY KEY DEFAULT nextval('term_path_pk_seq'::text)
term.term_id	subject_term_id	integer	UNIQUE#1 NOT NULL
term.term_id	predicate_term_id	integer	UNIQUE#1 NOT NULL
term.term_id	object_term_id	integer	UNIQUE#1 NOT NULL
ontology.ontology_id	ontology_id	integer	UNIQUE#1 NOT NULL
	distance	integer	UNIQUE#1

Index - Schema public

Table: term_relationship

term_relationship Structure
F-Key	Name	Type	Description
	term_relationship_id	integer	PRIMARY KEY DEFAULT nextval('term_relationship_pk_seq'::text)
term.term_id	subject_term_id	integer	UNIQUE#1 NOT NULL
term.term_id	predicate_term_id	integer	UNIQUE#1 NOT NULL
term.term_id	object_term_id	integer	UNIQUE#1 NOT NULL
ontology.ontology_id	ontology_id	integer	UNIQUE#1 NOT NULL

Tables referencing this one via Foreign Key Constraints:

term_relationship_term

Index - Schema public

Table: term_relationship_term

term_relationship_term Structure
F-Key	Name	Type	Description
term_relationship.term_relationship_id	term_relationship_id	integer	PRIMARY KEY
term.term_id	term_id	integer	UNIQUE NOT NULL

Index - Schema public

Table: term_synonym

term_synonym Structure
F-Key	Name	Type	Description
	synonym	character varying(255)	PRIMARY KEY
term.term_id	term_id	integer	PRIMARY KEY

Index - Schema public

Function: constrain_taxon( )

Returns: integer

Language: SQL

CREATE RULE rule_taxon_i
       AS ON INSERT TO taxon
       WHERE (SELECT oid FROM taxon WHERE ncbi_taxon_id = new.ncbi_taxon_id)
       	     IS NOT NULL
       DO INSTEAD NOTHING
;
SELECT 1;

Function: unconstrain_taxon( )

Returns: integer

Language: SQL

DROP RULE rule_taxon_i ON taxon;
SELECT 1;

Generated by PostgreSQL Autodoc

W3C HTML 4.01 Strict